Carcinogenesis, Vol. 22, No. 7, 987-998,
July 2001
© 2001 Oxford University Press
COMMENTARY |
Base excision repair in a network of defence and tolerance
Institute of Cancer Research and Molecular Biology, Norwegian University of Science and Technology, N-7489 Trondheim, Norway
Abbreviations: AP sites,abasic sites; BER,base excision repair; dRP,deoxyribose 5-phosphate; HNPCC,hereditary non-polyposis colon cancer; MMR,mismatch repair; MPG,methylpurine-DNA glycosylase; NER,nucleotide excision repair; PCNA,proliferating cell nuclear antigen; Pol,DNA polymerase; RFC,replication factor C; TDG,thymine/uracil mismatch glycosylase; TLS,translesion DNA synthesis; UDG,uracil-DNA glycosylase; UNG,uracil-DNA glycosylase.
| Introduction |
|---|
Survival of a species depends on balanced generation of genetic variation but at the same time on the protection of the genome from changes that cause disease and fitness reduction. DNA repair pathways limit mutations but do not totally eliminate them. In fact, some DNA repair pathways are error prone. DNA repair thus has a central function not only in protecting the genome, but also in the generation of genetic diversity. Expression of DNA repair proteins is subject to a delicate balance where both too few and too many of a type may result in increased cytotoxicity and/or mutation (14). DNA repair is integrated with transcription, replication, cell cycle control and apoptosis in complex networks (5), a full discussion of which is beyond the scope of this article, and our abilities. While DNA repair is an ancient and conserved defence mechanism, various pathways, and
| Sources of damage to the genome |
|---|
| Base excision repair |
|---|
| Knockout mice deficient in BER |
|---|
| DNA glycosylases may have overlapping functions in BER and other DNA repair pathways also complement BER |
|---|
| Are endogenous damage and cellular transactions major causes of mutations and cancer? |
|---|
Mutation and promotion in cancer development
Error-prone DNA polymerases in generation of endogenous mutations
Does transcription across non-blocking DNA lesions contribute to mutations?
| Is a major role of BER to protect the long-term integrity of the genome? |
|---|
| Future perspectives |
|---|
| Notes |
|---|
| Acknowledgments |
|---|
| References |
|---|
This article has been cited by other articles:
![]() |
S. M. K. Pulukuri, J. A. Knost, N. Estes, and J. S. Rao Small Interfering RNA-Directed Knockdown of Uracil DNA Glycosylase Induces Apoptosis and Sensitizes Human Prostate Cancer Cells to Genotoxic Stress Mol. Cancer Res., August 1, 2009; 7(8): 1285 - 1293. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Pogorzala, S. Mookerjee, and E. A. Sia Evidence That Msh1p Plays Multiple Roles in Mitochondrial Base Excision Repair Genetics, July 1, 2009; 182(3): 699 - 709. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Takao, Y. Oohata, K. Kitadokoro, K. Kobayashi, S. Iwai, A. Yasui, S. Yonei, and Q.-M. Zhang Human Nei-like protein NEIL3 has AP lyase activity specific for single-stranded DNA and confers oxidative stress resistance in Escherichia coli mutant. Genes Cells, February 1, 2009; 14(2): 261 - 270. [Abstract] [Full Text] [PDF] |
||||
![]() |
C.-W. Yung, Y. Okugawa, C. Otsuka, K. Okamoto, S. Arimoto, D. Loakes, K. Negishi, and T. Negishi Influence of neighbouring base sequences on the mutagenesis induced by 7,8-dihydro-8-oxoguanine in yeast Mutagenesis, November 1, 2008; 23(6): 509 - 513. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. Allen, D. C. Herbert, C. A. McMahan, V. Rotrekl, R. W. Sobol, S. H. Wilson, and C. A. Walter Mutagenesis Is Elevated in Male Germ Cells Obtained from DNA Polymerase-beta Heterozygous Mice Biol Reprod, November 1, 2008; 79(5): 824 - 831. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y.-Q. Li, P.-Z. Zhou, X.-D. Zheng, C. P. Walsh, and G.-L. Xu Association of Dnmt3a and thymine DNA glycosylase links DNA methylation with base-excision repair Nucleic Acids Res., January 28, 2007; 35(2): 390 - 400. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Muftuoglu, H. K. Wong, S. Z. Imam, D. M. Wilson III, V. A. Bohr, and P. L. Opresko Telomere Repeat Binding Factor 2 Interacts with Base Excision Repair Proteins and Stimulates DNA Synthesis by DNA Polymerase {beta} Cancer Res., January 1, 2006; 66(1): 113 - 124. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Gonzalez-Barrera, A. Sanchez, J. F. Ruiz, R. Juarez, A. J. Picher, G. Terrados, P. Andrade, and L. Blanco Characterization of SpPol4, a unique X-family DNA polymerase in Schizosaccharomyces pombe Nucleic Acids Res., August 24, 2005; 33(15): 4762 - 4774. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. A. Doudican, B. Song, G. S. Shadel, and P. W. Doetsch Oxidative DNA Damage Causes Mitochondrial Genomic Instability in Saccharomyces cerevisiae Mol. Cell. Biol., June 15, 2005; 25(12): 5196 - 5204. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Hu, M. P. McDermott, and S. A. Ahrendt The p53 Codon 72 Proline Allele Is Associated with p53 Gene Mutations in Non-Small Cell Lung Cancer Clin. Cancer Res., April 1, 2005; 11(7): 2502 - 2509. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. Sarkar, S. Lemaire, D. Wu-Scharf, E. Issakidis-Bourguet, and H. Cerutti Functional Specialization of Chlamydomonas reinhardtii Cytosolic Thioredoxin h1 in the Response to Alkylation-Induced DNA Damage Eukaryot. Cell, February 1, 2005; 4(2): 262 - 273. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. J. Mone, T. Bernas, C. Dinant, F. A. Goedvree, E. M. M. Manders, M. Volker, A. B. Houtsmuller, J. H. J. Hoeijmakers, W. Vermeulen, and R. van Driel In vivo dynamics of chromatin-associated complex formation in mammalian nucleotide excision repair PNAS, November 9, 2004; 101(45): 15933 - 15937. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Wang, N. Bhattacharyya, D. M. Chelsea, P. F. Escobar, and S. Banerjee A Novel Nuclear Protein, MGC5306 Interacts with DNA Polymerase {beta} and Has a Potential Role in Cellular Phenotype Cancer Res., November 1, 2004; 64(21): 7673 - 7677. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Huamani, C. A. McMahan, D. C. Herbert, R. Reddick, J. R. McCarrey, M. I. MacInnes, D. J. Chen, and C. A. Walter Spontaneous Mutagenesis Is Enhanced in Apex Heterozygous Mice Mol. Cell. Biol., September 15, 2004; 24(18): 8145 - 8153. [Abstract] [Full Text] [PDF] |
||||
![]() |
I. Zurer, L. J. Hofseth, Y. Cohen, M. Xu-Welliver, S. P. Hussain, C. C. Harris, and V. Rotter The role of p53 in base excision repair following genotoxic stress Carcinogenesis, January 1, 2004; 25(1): 11 - 19. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Han, S. E. Hankinson, I. De Vivo, D. Spiegelman, R. M. Tamimi, H. W. Mohrenweiser, G. A. Colditz, and D. J. Hunter A Prospective Study of XRCC1 Haplotypes and Their Interaction with Plasma Carotenoids on Breast Cancer Risk Cancer Res., December 1, 2003; 63(23): 8536 - 8541. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. L. Meadows, B. Song, and P. W. Doetsch Characterization of AP lyase activities of Saccharomyces cerevisiae Ntg1p and Ntg2p: implications for biological function Nucleic Acids Res., October 1, 2003; 31(19): 5560 - 5567. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. Moller, U. Vogel, A. Pedersen, L. O. Dragsted, B. Sandstrom, and S. Loft No Effect of 600 Grams Fruit and Vegetables Per Day on Oxidative DNA Damage and Repair in Healthy Nonsmokers Cancer Epidemiol. Biomarkers Prev., October 1, 2003; 12(10): 1016 - 1022. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. L. CADET, S. JAYANTHI, and X. DENG Speed kills: cellular and molecular bases of methamphetamine-induced nerve terminal degeneration and neuronal apoptosis FASEB J, October 1, 2003; 17(13): 1775 - 1788. [Abstract] [Full Text] [PDF] |
||||
![]() |
M.-L. Cheng, H.-Y. Ho, Y.-W. Huang, F.-J. Lu, and D. T.-Y. Chiu Humic Acid Induces Oxidative DNA Damage, Growth Retardation, and Apoptosis in Human Primary Fibroblasts Experimental Biology and Medicine, April 1, 2003; 228(4): 413 - 423. [Abstract] [Full Text] [PDF] |
||||
![]() |
G. W. Intano, E. J. Cho, C. A. McMahan, and C. A. Walter Age-related Base Excision Repair Activity in Mouse Brain and Liver Nuclear Extracts J. Gerontol. A Biol. Sci. Med. Sci., March 1, 2003; 58(3): B205 - 211. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Takao, S.-i. Kanno, K. Kobayashi, Q.-M. Zhang, S. Yonei, G. T. J. van der Horst, and A. Yasui A Back-up Glycosylase in Nth1 Knock-out Mice Is a Functional Nei (Endonuclease VIII) Homologue J. Biol. Chem., October 25, 2002; 277(44): 42205 - 42213. [Abstract] [Full Text] [PDF] |
||||
![]() |
U. Vogel, P. Moller, L. Dragsted, S. Loft, A. Pedersen, and B. Sandstrom Inter-individual variation, seasonal variation and close correlation of OGG1 and ERCC1 mRNA levels in full blood from healthy volunteers Carcinogenesis, September 1, 2002; 23(9): 1505 - 1509. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. Moller, H. Wallin, U. Vogel, H. Autrup, L. Risom, M. T. Hald, B. Daneshvar, L. O. Dragsted, H. E. Poulsen, and S. Loft Mutagenicity of 2-amino-3-methylimidazo[4,5-f]quinoline in colon and liver of Big Blue rats: role of DNA adducts, strand breaks, DNA repair and oxidative stress Carcinogenesis, August 1, 2002; 23(8): 1379 - 1385. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. W. O'Rourke, N. A. Doudican, M. D. Mackereth, P. W. Doetsch, and G. S. Shadel Mitochondrial Dysfunction Due to Oxidative Mitochondrial DNA Damage Is Reduced through Cooperative Actions of Diverse Proteins Mol. Cell. Biol., June 15, 2002; 22(12): 4086 - 4093. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. A. Sokhansanj, G. R. Rodrigue, J. P. Fitch, and D. M. W. III A quantitative model of human DNA base excision repair. I. mechanistic insights Nucleic Acids Res., April 15, 2002; 30(8): 1817 - 1825. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. E. Bennett, J.-S. Sung, and D. W. Mosbaugh Fidelity of Uracil-initiated Base Excision DNA Repair in DNA Polymerase beta -Proficient and -Deficient Mouse Embryonic Fibroblast Cell Extracts J. Biol. Chem., November 2, 2001; 276(45): 42588 - 42600. [Abstract] [Full Text] [PDF] |
||||
















